Variant report

Variant	rs1345782
Chromosome Location	chr5:59673366-59673367
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10514893	0.87[CHD][hapmap];0.88[JPT][hapmap]
rs10514894	0.87[CHD][hapmap];0.88[JPT][hapmap]
rs12189304	0.80[ASN][1000 genomes]
rs1423473	1.00[CEU][hapmap]
rs16877933	0.86[CHD][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs16877936	0.86[CHD][hapmap];0.88[JPT][hapmap];0.80[ASN][1000 genomes]
rs16877964	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16877967	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16877980	0.80[ASN][1000 genomes]
rs16877986	0.92[GIH][hapmap];0.83[TSI][hapmap]
rs16877993	0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs16878035	0.88[JPT][hapmap]
rs16878037	0.88[JPT][hapmap]
rs16878108	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs17326404	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs17378750	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1895412	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs55737169	0.81[EUR][1000 genomes]
rs56262275	0.92[ASN][1000 genomes]
rs58594585	0.80[ASN][1000 genomes]
rs60257457	0.81[EUR][1000 genomes]
rs60962155	0.94[ASN][1000 genomes]
rs61379877	0.81[EUR][1000 genomes]
rs61474228	0.92[ASN][1000 genomes]
rs6449471	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs6860277	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6864442	0.88[JPT][hapmap]
rs6875484	0.84[JPT][hapmap]
rs6881782	0.94[ASN][1000 genomes]
rs6886304	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6886423	0.83[ASN][1000 genomes]
rs6887545	0.88[JPT][hapmap]
rs6887925	0.88[JPT][hapmap]
rs6891858	1.00[CEU][hapmap]
rs73108618	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73108627	0.98[ASN][1000 genomes]
rs73108631	0.98[ASN][1000 genomes]
rs73108638	0.80[ASN][1000 genomes]
rs73108666	0.81[EUR][1000 genomes]
rs73108670	0.81[EUR][1000 genomes]
rs73759054	0.92[EUR][1000 genomes]
rs7702188	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7702474	1.00[CEU][hapmap]
rs7705194	1.00[CEU][hapmap]
rs7712662	1.00[CEU][hapmap]
rs7734108	1.00[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59647200-59694200	Weak transcription	Primary B cells from cord blood	blood
2	chr5:59650400-59674800	Weak transcription	Aorta	Aorta
3	chr5:59662600-59680200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr5:59672200-59673600	Enhancers	HepG2	liver
5	chr5:59673200-59674200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr5:59673200-59675000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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