Variant report

Variant	rs6875484
Chromosome Location	chr5:59711640-59711641
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10056638	0.91[ASN][1000 genomes]
rs10073390	0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10939848	0.84[EUR][1000 genomes]
rs11745274	0.93[ASN][1000 genomes]
rs11745327	0.93[ASN][1000 genomes]
rs1345782	0.84[JPT][hapmap]
rs16877964	0.84[JPT][hapmap]
rs16877967	0.88[JPT][hapmap]
rs16877993	1.00[JPT][hapmap]
rs16878035	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16878037	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs16878086	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17326404	0.88[JPT][hapmap]
rs17378750	0.88[JPT][hapmap]
rs28460011	0.93[ASN][1000 genomes]
rs28635931	0.93[ASN][1000 genomes]
rs56151644	0.93[ASN][1000 genomes]
rs58376959	0.93[ASN][1000 genomes]
rs6860277	0.86[JPT][hapmap]
rs6864442	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6886304	0.84[JPT][hapmap]
rs6887545	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6887925	1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6896850	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73759052	0.93[ASN][1000 genomes]
rs73759053	0.93[ASN][1000 genomes]
rs73759054	0.91[ASN][1000 genomes]
rs7702188	0.84[JPT][hapmap]
rs7725629	1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9291690	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1015381	chr5:59678425-59772485	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1034331	chr5:59678773-59773467	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1018614	chr5:59708223-59910308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1033344	chr5:59710033-59773467	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59695000-59712600	Weak transcription	Primary B cells from cord blood	blood
2	chr5:59696000-59713200	Weak transcription	Aorta	Aorta
3	chr5:59707200-59712400	Weak transcription	HepG2	liver

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