Variant report

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10514893	0.88[JPT][hapmap]
rs10514894	0.88[JPT][hapmap]
rs1115372	0.80[YRI][hapmap]
rs12189147	0.84[YRI][hapmap]
rs12189304	0.86[ASN][1000 genomes]
rs1345782	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1363862	0.80[YRI][hapmap]
rs1423247	0.82[YRI][hapmap]
rs16877933	0.88[JPT][hapmap]
rs16877936	0.88[JPT][hapmap]
rs16877964	0.90[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16877967	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16877980	0.86[ASN][1000 genomes]
rs16877993	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16878035	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs16878037	0.82[CHB][hapmap];0.88[JPT][hapmap]
rs16878086	0.82[CHB][hapmap]
rs16878106	0.90[CHB][hapmap]
rs17326404	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs17378750	0.91[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17839379	0.83[YRI][hapmap]
rs2042315	0.84[YRI][hapmap]
rs2910629	0.83[YRI][hapmap]
rs56262275	0.84[ASN][1000 genomes]
rs60962155	0.80[ASN][1000 genomes]
rs6860887	0.83[YRI][hapmap]
rs6864442	0.83[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap]
rs6875484	0.86[JPT][hapmap]
rs6881782	0.89[ASN][1000 genomes]
rs6886304	0.80[CHB][hapmap];1.00[JPT][hapmap]
rs6887545	0.87[CEU][hapmap];0.89[JPT][hapmap]
rs6887925	0.83[CEU][hapmap];0.82[CHB][hapmap];0.88[JPT][hapmap]
rs73108618	0.89[ASN][1000 genomes]
rs73108627	0.84[ASN][1000 genomes]
rs73108631	0.84[ASN][1000 genomes]
rs73108638	0.86[ASN][1000 genomes]
rs7702188	0.90[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7725629	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59647200-59694200	Weak transcription	Primary B cells from cord blood	blood
2	chr5:59649400-59668200	Weak transcription	Gastric	stomach
3	chr5:59650400-59674800	Weak transcription	Aorta	Aorta
4	chr5:59660000-59666800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:59661400-59668000	Weak transcription	HepG2	liver
6	chr5:59662600-59680200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr5:59665400-59668000	Weak transcription	Pancreas	Pancrea
8	chr5:59666400-59666800	Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr5:59666400-59667400	Enhancers	Stomach Mucosa	stomach
10	chr5:59666600-59668800	Enhancers	Pancreatic Islets	Pancreatic Islet

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