Variant report

Variant	rs16877993
Chromosome Location	chr5:59694155-59694156
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10514893	0.88[JPT][hapmap]
rs10514894	0.88[JPT][hapmap]
rs12189304	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1345782	0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1423471	0.91[CHB][hapmap]
rs1423473	0.91[CHB][hapmap]
rs16877933	0.88[JPT][hapmap]
rs16877936	0.88[JPT][hapmap]
rs16877964	0.81[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16877967	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs16877980	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16878035	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs16878037	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs16878086	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs16878106	1.00[CHB][hapmap]
rs16878108	0.92[CHB][hapmap]
rs17326404	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17378750	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1862589	0.91[CHB][hapmap]
rs3763059	0.91[CHB][hapmap]
rs4090603	0.91[CHB][hapmap]
rs60962155	0.86[ASN][1000 genomes]
rs61474228	0.87[ASN][1000 genomes]
rs6449471	0.91[CHB][hapmap]
rs6860277	0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs6864442	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6875484	1.00[JPT][hapmap]
rs6878429	0.92[CHB][hapmap]
rs6886304	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs6887545	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6887925	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6891858	0.92[CHB][hapmap]
rs73108627	0.82[ASN][1000 genomes]
rs73108631	0.82[ASN][1000 genomes]
rs73108638	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7702188	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs7702474	0.91[CHB][hapmap]
rs7705194	0.92[CHB][hapmap]
rs7712662	0.91[CHB][hapmap]
rs7723861	0.91[CHB][hapmap]
rs7725629	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs7734108	0.91[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
3	nsv1015381	chr5:59678425-59772485	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1034331	chr5:59678773-59773467	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59647200-59694200	Weak transcription	Primary B cells from cord blood	blood
2	chr5:59686600-59700200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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