Variant report

Variant	rs6886423
Chromosome Location	chr5:59683289-59683290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10514893	0.92[EUR][1000 genomes]
rs10514894	0.92[EUR][1000 genomes]
rs1345782	0.83[ASN][1000 genomes]
rs16877933	0.92[EUR][1000 genomes]
rs16877936	0.92[EUR][1000 genomes]
rs16877964	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16877967	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16878035	0.93[EUR][1000 genomes]
rs16878037	0.93[EUR][1000 genomes]
rs16878086	0.93[EUR][1000 genomes]
rs17326404	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17378750	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1862589	0.93[EUR][1000 genomes]
rs4130444	0.81[EUR][1000 genomes]
rs4580738	0.81[EUR][1000 genomes]
rs55952213	0.96[EUR][1000 genomes]
rs56151644	0.93[EUR][1000 genomes]
rs56217581	0.93[EUR][1000 genomes]
rs56247947	0.96[EUR][1000 genomes]
rs56262275	0.96[EUR][1000 genomes]
rs57177718	0.96[EUR][1000 genomes]
rs58376959	0.93[EUR][1000 genomes]
rs58512371	0.96[EUR][1000 genomes]
rs58594585	0.92[EUR][1000 genomes]
rs58704174	0.96[EUR][1000 genomes]
rs58891299	0.93[EUR][1000 genomes]
rs59014679	0.96[EUR][1000 genomes]
rs59576667	0.96[EUR][1000 genomes]
rs59578756	0.96[EUR][1000 genomes]
rs60104228	0.93[EUR][1000 genomes]
rs60962155	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61474228	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6881782	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6886304	0.83[ASN][1000 genomes]
rs73106781	0.96[EUR][1000 genomes]
rs73106782	0.96[EUR][1000 genomes]
rs73108618	0.81[ASN][1000 genomes]
rs73108627	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73108631	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73759052	0.93[EUR][1000 genomes]
rs73759053	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7702188	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7725629	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025856	chr5:59188419-59928852	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv830316	chr5:59480269-59689829	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv598288	chr5:59627555-60003460	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
4	nsv1015381	chr5:59678425-59772485	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv1034331	chr5:59678773-59773467	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:59647200-59694200	Weak transcription	Primary B cells from cord blood	blood
2	chr5:59680200-59683800	Enhancers	Stomach Smooth Muscle	stomach
3	chr5:59680800-59683800	Enhancers	Rectal Smooth Muscle	rectum
4	chr5:59680800-59684200	Enhancers	Colon Smooth Muscle	Colon
5	chr5:59681200-59683600	Enhancers	Fetal Brain Male	brain
6	chr5:59681600-59683400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr5:59682400-59684000	Enhancers	Fetal Stomach	stomach
8	chr5:59682600-59685800	Weak transcription	Aorta	Aorta
9	chr5:59682800-59683400	Enhancers	A549	lung
10	chr5:59683000-59683400	Enhancers	HepG2	liver

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