Variant report

Variant	rs16879799
Chromosome Location	chr6:85725278-85725279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:85724810..85725651-chr6:85836305..85837298,5	MCF-7	breast:
2	chr6:85724690..85725354-chr6:85753174..85754171,2	MCF-7	breast:
3	chr6:85137952..85138652-chr6:85724821..85725677,3	MCF-7	breast:
4	chr6:85723674..85727379-chr6:85727758..85731763,4	K562	blood:
5	chr6:85724638..85726223-chr6:86032868..86033803,4	MCF-7	breast:
6	chr6:85725270..85728230-chr6:85734946..85737521,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10498950	0.91[JPT][hapmap]
rs10806289	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11753876	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11754948	0.90[EUR][1000 genomes]
rs11756244	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11757174	0.88[EUR][1000 genomes]
rs11962597	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11965624	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965782	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11965808	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12661027	0.90[EUR][1000 genomes]
rs16875500	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17194619	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17802851	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17802995	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28541786	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35593857	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56046103	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs66513010	0.83[AFR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66904123	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67475583	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67785337	0.83[AFR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6930127	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7743053	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021282	chr6:85081075-85820057	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:85724400-85725600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:85724400-85726000	Enhancers	Fetal Muscle Trunk	muscle
3	chr6:85724600-85725800	Enhancers	Fetal Stomach	stomach
4	chr6:85724800-85725400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:85724800-85725600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr6:85724800-85725600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr6:85724800-85726000	Enhancers	Fetal Muscle Leg	muscle
8	chr6:85725000-85725400	Active TSS	A549	lung
9	chr6:85725000-85725600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr6:85725000-85725600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:85725000-85725600	Enhancers	HUVEC	blood vessel
12	chr6:85725000-85725800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:85725000-85726000	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr6:85725200-85726000	Enhancers	H1 Cell Line	embryonic stem cell

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