Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10806289	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11753876	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11754948	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11756244	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11757174	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11962597	0.95[EUR][1000 genomes]
rs11965624	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11965782	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs11965808	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12661027	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16875500	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16879799	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17194619	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs17802851	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs17802995	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs28541786	0.84[EUR][1000 genomes]
rs35593857	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs56046103	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs66513010	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs66904123	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs67785337	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs6930127	0.84[EUR][1000 genomes]
rs7743053	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021282	chr6:85081075-85820057	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:85713000-85719000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:85716200-85718800	Enhancers	Fetal Muscle Leg	muscle
3	chr6:85716600-85724800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:85716600-85725000	Weak transcription	HUVEC	blood vessel
5	chr6:85717600-85718800	Enhancers	NHDF-Ad	bronchial
6	chr6:85718000-85718600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:85718200-85718600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr6:85718200-85718800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:85718200-85718800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

Quick Search: