Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10498950	0.91[JPT][hapmap];0.93[YRI][hapmap]
rs10806289	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11753876	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11756244	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11962597	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965624	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11965782	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11965808	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16875500	0.83[EUR][1000 genomes]
rs16879799	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17194619	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17802851	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17802995	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28541786	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35593857	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56046103	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66513010	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66904123	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67475583	0.83[EUR][1000 genomes]
rs67785337	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930127	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021282	chr6:85081075-85820057	Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1017418	chr6:85344786-86259540	Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv538347	chr6:85344786-86259540	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:85769200-85774800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:85769200-85774800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr6:85772600-85773200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:85772600-85773600	Enhancers	A549	lung
5	chr6:85772800-85774600	Enhancers	Liver	Liver
6	chr6:85773000-85773400	Enhancers	NHDF-Ad	bronchial
7	chr6:85773000-85773400	Enhancers	Osteobl	bone
8	chr6:85773000-85773800	Enhancers	HepG2	liver

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