Variant report

Variant	rs1688304
Chromosome Location	chr3:111766559-111766560
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1318554	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1561911	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1662265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1844927	0.80[EUR][1000 genomes]
rs2120093	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4682080	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4682349	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4682350	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6438026	0.87[EUR][1000 genomes]
rs7625219	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7650559	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs774769	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs774770	0.92[AFR][1000 genomes]
rs774772	0.91[AFR][1000 genomes]
rs774778	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9829318	0.88[EUR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111757600-111767800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:111760600-111766600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:111760600-111767600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:111760600-111767600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:111762400-111771000	Weak transcription	Gastric	stomach
6	chr3:111762600-111767800	Weak transcription	Fetal Intestine Large	intestine
7	chr3:111763000-111767400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr3:111763000-111767600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr3:111763200-111766600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:111763200-111767600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr3:111763200-111772800	Weak transcription	Thymus	Thymus
12	chr3:111763400-111769600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr3:111765600-111766600	Enhancers	HMEC	breast
14	chr3:111765600-111766800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:111766400-111766800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:111766400-111767400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links