Variant report

Variant	rs774778
Chromosome Location	chr3:111763779-111763780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111752540..111756075-chr3:111760637..111763869,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176040	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1318554	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1561911	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1662265	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1688304	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1844927	0.84[EUR][1000 genomes]
rs2120093	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682080	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682349	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4682350	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6438026	0.90[EUR][1000 genomes]
rs7625219	0.93[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7650559	1.00[CEU][hapmap];0.80[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs774770	0.93[ASW][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap]
rs9829318	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111757600-111767800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:111760600-111766600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:111760600-111767600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:111760600-111767600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:111762200-111764000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:111762400-111763800	Enhancers	HUVEC	blood vessel
7	chr3:111762400-111771000	Weak transcription	Gastric	stomach
8	chr3:111762600-111765600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr3:111762600-111767800	Weak transcription	Fetal Intestine Large	intestine
10	chr3:111763000-111765600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:111763000-111765600	Weak transcription	HMEC	breast
12	chr3:111763000-111765600	Weak transcription	NHEK	skin
13	chr3:111763000-111765800	Weak transcription	NH-A	brain
14	chr3:111763000-111766400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:111763000-111767400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr3:111763000-111767600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr3:111763200-111764200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr3:111763200-111766600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:111763200-111767600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr3:111763200-111772800	Weak transcription	Thymus	Thymus
21	chr3:111763400-111765600	Weak transcription	A549	lung
22	chr3:111763400-111769600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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