Variant report

Variant	rs1662265
Chromosome Location	chr3:111767694-111767695
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1318554	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1561911	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1688304	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1844927	0.80[EUR][1000 genomes]
rs2120093	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs340143	0.84[YRI][hapmap]
rs4682080	1.00[CEU][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4682349	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4682350	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6438026	0.87[EUR][1000 genomes]
rs7625219	1.00[CEU][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7650559	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs774769	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs774770	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs774772	0.91[AFR][1000 genomes]
rs774778	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9829318	0.88[EUR][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111757600-111767800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:111762400-111771000	Weak transcription	Gastric	stomach
3	chr3:111762600-111767800	Weak transcription	Fetal Intestine Large	intestine
4	chr3:111763200-111772800	Weak transcription	Thymus	Thymus
5	chr3:111763400-111769600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr3:111766800-111768600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:111767200-111768200	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr3:111767400-111768400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:111767400-111768600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr3:111767400-111768600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr3:111767600-111767800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr3:111767600-111768000	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr3:111767600-111768000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:111767600-111768200	Enhancers	H1 Cell Line	embryonic stem cell
15	chr3:111767600-111768200	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr3:111767600-111768400	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr3:111767600-111768600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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