Variant report

Variant	rs6438026
Chromosome Location	chr3:111761187-111761188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:111752540..111756075-chr3:111760637..111763869,3	MCF-7	breast:
2	chr3:111757290..111759016-chr3:111759176..111761437,2	K562	blood:
3	chr3:111757946..111760451-chr3:111761059..111762628,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176040	Chromatin interaction

rs_ID	r²[population]
rs1318554	0.87[EUR][1000 genomes]
rs1561911	0.87[EUR][1000 genomes]
rs1662265	0.87[EUR][1000 genomes]
rs1688304	0.87[EUR][1000 genomes]
rs1844927	0.93[EUR][1000 genomes]
rs2120093	0.90[EUR][1000 genomes]
rs4682080	0.90[EUR][1000 genomes]
rs4682349	0.90[EUR][1000 genomes]
rs4682350	0.90[EUR][1000 genomes]
rs7625219	0.90[EUR][1000 genomes]
rs7650559	0.90[EUR][1000 genomes]
rs774778	0.90[EUR][1000 genomes]
rs9829318	0.82[EUR][1000 genomes]

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111754400-111762600	Weak transcription	Fetal Heart	heart
2	chr3:111756200-111763200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:111757600-111767800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr3:111758000-111762400	Weak transcription	HMEC	breast
5	chr3:111758200-111761800	Weak transcription	A549	lung
6	chr3:111758200-111763000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:111758400-111762200	Weak transcription	NHEK	skin
8	chr3:111758600-111761600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr3:111759200-111762400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr3:111759400-111762400	Weak transcription	Fetal Thymus	thymus
11	chr3:111759600-111762800	Weak transcription	Thymus	Thymus
12	chr3:111759800-111762600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:111760200-111762600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr3:111760600-111762400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:111760600-111766600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr3:111760600-111767600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr3:111760600-111767600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr3:111760800-111761800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr3:111760800-111762400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr3:111761000-111762400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr3:111761000-111762400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:111761000-111762400	Enhancers	Pancreatic Islets	Pancreatic Islet

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