Variant report

Variant	rs16884857
Chromosome Location	chr6:36070227-36070228
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36052124..36054923-chr6:36068952..36071940,2	K562	blood:
2	chr6:36069399..36071827-chr6:36084896..36086577,2	K562	blood:
3	chr6:36066380..36072646-chr6:36077457..36080962,6	K562	blood:
4	chr6:36068703..36074391-chr6:36083766..36088093,5	K562	blood:

Extended variants
information (count: 73 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs16883819	0.95[EUR][1000 genomes]
rs16883860	0.95[EUR][1000 genomes]
rs16883989	0.95[EUR][1000 genomes]
rs16884628	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884660	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884694	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884906	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16884919	1.00[EUR][1000 genomes]
rs1967966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2237096	0.95[EUR][1000 genomes]
rs3730327	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs3730366	0.95[EUR][1000 genomes]
rs3761980	0.95[EUR][1000 genomes]
rs3804451	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs41271263	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs56044978	0.97[EUR][1000 genomes]
rs56059109	0.95[EUR][1000 genomes]
rs56133220	0.95[EUR][1000 genomes]
rs56156688	0.95[EUR][1000 genomes]
rs56327416	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56362075	0.95[EUR][1000 genomes]
rs56413204	0.95[EUR][1000 genomes]
rs56715462	0.80[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs58390233	0.95[EUR][1000 genomes]
rs58583792	0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs58690654	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60100837	0.95[EUR][1000 genomes]
rs60342497	0.92[EUR][1000 genomes]
rs60481532	0.95[EUR][1000 genomes]
rs60909394	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61195139	0.95[EUR][1000 genomes]
rs61212706	0.95[EUR][1000 genomes]
rs61364424	0.95[EUR][1000 genomes]
rs61763101	0.95[EUR][1000 genomes]
rs6457878	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6908622	0.95[EUR][1000 genomes]
rs6910685	0.95[EUR][1000 genomes]
rs6914570	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6921999	0.95[EUR][1000 genomes]
rs6930333	0.93[EUR][1000 genomes]
rs6932598	0.95[EUR][1000 genomes]
rs6934216	0.95[EUR][1000 genomes]
rs6936327	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407868	0.86[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73407870	0.95[EUR][1000 genomes]
rs73407871	0.95[EUR][1000 genomes]
rs73407876	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs73409842	0.95[EUR][1000 genomes]
rs73729685	0.95[EUR][1000 genomes]
rs73729698	0.95[EUR][1000 genomes]
rs73730437	0.95[EUR][1000 genomes]
rs73730440	0.95[EUR][1000 genomes]
rs73730459	0.97[EUR][1000 genomes]
rs7745082	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7745536	0.95[EUR][1000 genomes]
rs7745927	0.95[EUR][1000 genomes]
rs7747846	0.95[EUR][1000 genomes]
rs7748078	0.95[EUR][1000 genomes]
rs7752459	0.97[EUR][1000 genomes]
rs7759175	0.95[EUR][1000 genomes]
rs7760405	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7760578	0.95[EUR][1000 genomes]
rs7761118	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7762483	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7764494	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7766032	1.00[EUR][1000 genomes]
rs7769981	0.97[EUR][1000 genomes]
rs7770183	0.97[EUR][1000 genomes]
rs7771484	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7772088	0.95[EUR][1000 genomes]
rs7775290	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv2399081	chr6:36069938-36070385	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs16884857	SLC26A8	cis	Adipose Subcutaneous	GTEx
rs16884857	SLC26A8	cis	Thyroid	GTEx
rs16884857	SLC26A8	cis	Nerve Tibial	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36022000-36088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:36051600-36088800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:36051800-36070600	Weak transcription	Pancreas	Pancrea
4	chr6:36051800-36070600	Weak transcription	Psoas Muscle	Psoas
5	chr6:36051800-36070800	Weak transcription	Aorta	Aorta
6	chr6:36051800-36075800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:36052000-36070600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:36052000-36070600	Weak transcription	Brain Angular Gyrus	brain
9	chr6:36052000-36070600	Weak transcription	NHLF	lung
10	chr6:36052000-36070800	Weak transcription	Esophagus	oesophagus
11	chr6:36052000-36075200	Weak transcription	Right Ventricle	heart
12	chr6:36052200-36070600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:36052200-36070800	Weak transcription	Gastric	stomach
14	chr6:36052200-36071400	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:36060200-36075000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:36060600-36070600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:36060600-36071400	Weak transcription	Fetal Brain Female	brain
18	chr6:36060600-36080800	Weak transcription	Ovary	ovary
19	chr6:36060800-36072000	Weak transcription	Brain Germinal Matrix	brain
20	chr6:36063000-36074800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr6:36063200-36070400	Weak transcription	Fetal Kidney	kidney
22	chr6:36063200-36080600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:36063400-36071400	Weak transcription	Fetal Brain Male	brain
24	chr6:36063400-36080600	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr6:36063600-36070400	Weak transcription	Rectal Smooth Muscle	rectum
26	chr6:36063600-36080800	Strong transcription	Primary neutrophils fromperipheralblood	blood
27	chr6:36063800-36071000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr6:36064400-36070800	Weak transcription	Lung	lung
29	chr6:36064600-36076000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:36064800-36070400	Weak transcription	Brain Anterior Caudate	brain
31	chr6:36064800-36070600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr6:36065000-36070600	Weak transcription	Spleen	Spleen
33	chr6:36065200-36070600	Weak transcription	Colonic Mucosa	Colon
34	chr6:36065400-36082600	Weak transcription	Stomach Mucosa	stomach
35	chr6:36065600-36075600	Weak transcription	A549	lung
36	chr6:36066600-36071600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr6:36067000-36082800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
38	chr6:36067200-36070600	Weak transcription	HSMMtube	muscle
39	chr6:36067200-36070800	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr6:36067200-36072800	Strong transcription	Rectal Mucosa Donor 31	rectum
41	chr6:36067200-36074200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:36067200-36075000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
43	chr6:36067400-36081000	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr6:36067600-36070600	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr6:36067600-36080000	Strong transcription	Dnd41	blood
46	chr6:36067800-36072400	Weak transcription	Colon Smooth Muscle	Colon
47	chr6:36067800-36073800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr6:36067800-36075400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr6:36067800-36079600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr6:36068000-36072800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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