Variant report

Variant	rs61195139
Chromosome Location	chr6:36046226-36046227
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:35996015..35997737-chr6:36045551..36047124,2	MCF-7	breast:
2	chr6:36003182..36006144-chr6:36044765..36047625,2	K562	blood:
3	chr6:35994000..35997973-chr6:36041645..36047090,8	K562	blood:
4	chr6:36039959..36043329-chr6:36045547..36048658,3	K562	blood:
5	chr6:36043948..36046768-chr6:36065165..36067634,2	K562	blood:
6	chr6:36021411..36023940-chr6:36044736..36047636,2	K562	blood:
7	chr6:35992919..35998420-chr6:36043527..36047632,6	K562	blood:
8	chr6:36037602..36039878-chr6:36044052..36046238,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000112062	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10456082	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10456438	0.92[ASN][1000 genomes]
rs12204910	0.83[ASN][1000 genomes]
rs12206103	0.81[ASN][1000 genomes]
rs16883819	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883860	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883989	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884628	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884660	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884694	0.89[EUR][1000 genomes]
rs16884857	0.95[EUR][1000 genomes]
rs16884906	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884919	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1967966	0.92[EUR][1000 genomes]
rs2237094	0.94[ASN][1000 genomes]
rs2237096	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3730327	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3730366	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3761980	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3804451	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41271263	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55878630	0.83[ASN][1000 genomes]
rs56044978	0.85[AFR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56059109	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56133220	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56156688	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56327416	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56362075	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56413204	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56715462	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58390233	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58583792	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58690654	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60100837	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60342497	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60481532	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60909394	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61212706	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61364424	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61763101	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457878	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6908622	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910685	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914570	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921999	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6930333	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932598	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934216	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936327	0.95[EUR][1000 genomes]
rs73407868	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407870	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407871	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407876	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409842	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73729685	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73729698	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73730437	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73730440	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73730459	0.92[EUR][1000 genomes]
rs7745082	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745536	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745927	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747846	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7748078	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7752459	0.92[EUR][1000 genomes]
rs7759175	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760405	0.83[EUR][1000 genomes]
rs7760578	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761118	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762483	0.95[EUR][1000 genomes]
rs7764494	0.92[EUR][1000 genomes]
rs7766032	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769981	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7770183	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7771484	0.95[EUR][1000 genomes]
rs7772088	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775290	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs61195139	SLC26A8	cis	Adipose Subcutaneous	GTEx
rs61195139	SLC26A8	cis	Nerve Tibial	GTEx
rs61195139	SLC26A8	cis	Thyroid	GTEx

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36018200-36050000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:36020400-36047400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:36022000-36088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:36023000-36047400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:36028200-36046600	Weak transcription	Fetal Stomach	stomach
6	chr6:36028200-36047200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:36028200-36047800	Weak transcription	Brain Germinal Matrix	brain
8	chr6:36028200-36048400	Weak transcription	Fetal Brain Female	brain
9	chr6:36028400-36047400	Weak transcription	Colonic Mucosa	Colon
10	chr6:36028400-36047800	Weak transcription	Lung	lung
11	chr6:36028600-36046600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:36028600-36050200	Weak transcription	Spleen	Spleen
13	chr6:36029200-36048000	Weak transcription	NH-A	brain
14	chr6:36029600-36047600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr6:36033000-36046600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:36033200-36046800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:36033400-36047800	Weak transcription	Gastric	stomach
18	chr6:36033400-36048000	Weak transcription	Fetal Brain Male	brain
19	chr6:36033400-36050200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:36033600-36048000	Weak transcription	Ovary	ovary
21	chr6:36034400-36048000	Weak transcription	Fetal Kidney	kidney
22	chr6:36034400-36048000	Weak transcription	HSMMtube	muscle
23	chr6:36035400-36049400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:36035400-36050200	Weak transcription	NHLF	lung
25	chr6:36035600-36047200	Weak transcription	Brain Angular Gyrus	brain
26	chr6:36035600-36048000	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr6:36035800-36050000	Weak transcription	Aorta	Aorta
28	chr6:36036000-36047400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr6:36036200-36047800	Weak transcription	Right Ventricle	heart
30	chr6:36036200-36048000	Weak transcription	A549	lung
31	chr6:36036200-36050000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr6:36036200-36050000	Weak transcription	Psoas Muscle	Psoas
33	chr6:36036600-36048000	Weak transcription	Fetal Heart	heart
34	chr6:36037200-36048000	Weak transcription	Brain Anterior Caudate	brain
35	chr6:36037200-36050400	Weak transcription	Brain Substantia Nigra	brain
36	chr6:36038400-36050000	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr6:36039800-36047400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr6:36039800-36062000	Weak transcription	Stomach Mucosa	stomach
39	chr6:36040000-36049200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr6:36040400-36050200	Weak transcription	Esophagus	oesophagus
41	chr6:36040600-36051600	Strong transcription	HSMM	muscle
42	chr6:36040600-36053400	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr6:36040800-36052600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:36040800-36053400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:36040800-36053600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:36041200-36050000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr6:36041200-36050000	Strong transcription	Dnd41	blood
48	chr6:36041200-36051200	Strong transcription	NHDF-Ad	bronchial
49	chr6:36041200-36053400	Strong transcription	Fetal Thymus	thymus
50	chr6:36041200-36053600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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