Variant report

Variant	rs73407876
Chromosome Location	chr6:36033920-36033921
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36033505..36035161-chr6:36036109..36038565,2	MCF-7	breast:
2	chr6:35992836..35995217-chr6:36030418..36034418,3	K562	blood:
3	chr6:35994229..35997091-chr6:36033506..36037516,3	MCF-7	breast:
4	chr6:36005811..36007501-chr6:36031896..36034665,2	MCF-7	breast:
5	chr6:35995272..35997299-chr6:36031658..36035597,3	K562	blood:
6	chr6:35993717..35997299-chr6:36030418..36035597,4	K562	blood:
7	chr6:36030964..36032479-chr6:36032885..36035498,2	K562	blood:

Variant related genes	Relation type
ENSG00000112062	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10456082	0.92[ASN][1000 genomes]
rs10456438	0.92[ASN][1000 genomes]
rs12204910	0.83[ASN][1000 genomes]
rs12206103	0.81[ASN][1000 genomes]
rs16883819	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883860	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883989	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884628	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884660	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884694	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs16884857	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs16884906	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884919	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1967966	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2237094	0.94[ASN][1000 genomes]
rs2237096	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3730327	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3730366	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3761980	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3804451	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41271263	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55878630	0.83[ASN][1000 genomes]
rs56044978	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56059109	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56133220	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56156688	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56327416	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56362075	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56413204	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56715462	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58390233	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58583792	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58690654	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60100837	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60342497	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60481532	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60909394	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61195139	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61212706	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61364424	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61763101	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457878	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6908622	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910685	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914570	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921999	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6930333	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932598	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934216	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936327	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs73407868	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407870	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407871	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409842	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73729685	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73729698	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73730437	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73730440	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73730459	0.92[EUR][1000 genomes]
rs7745082	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745536	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745927	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747846	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7748078	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7752459	0.92[EUR][1000 genomes]
rs7759175	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760405	0.83[EUR][1000 genomes]
rs7760578	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761118	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762483	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7764494	0.92[EUR][1000 genomes]
rs7766032	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769981	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7770183	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7771484	0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7772088	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775290	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv528432	chr6:35958871-36035354	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs73407876	SLC26A8	cis	Thyroid	GTEx
rs73407876	SLC26A8	cis	Adipose Subcutaneous	GTEx
rs73407876	SLC26A8	cis	Nerve Tibial	GTEx

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36006400-36039800	Weak transcription	Esophagus	oesophagus
2	chr6:36018200-36050000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:36020400-36047400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:36022000-36088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:36023000-36047400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:36028200-36046000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:36028200-36046600	Weak transcription	Fetal Stomach	stomach
8	chr6:36028200-36047200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:36028200-36047800	Weak transcription	Brain Germinal Matrix	brain
10	chr6:36028200-36048400	Weak transcription	Fetal Brain Female	brain
11	chr6:36028400-36047400	Weak transcription	Colonic Mucosa	Colon
12	chr6:36028400-36047800	Weak transcription	Lung	lung
13	chr6:36028600-36035200	Weak transcription	NHEK	skin
14	chr6:36028600-36036600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:36028600-36043800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr6:36028600-36046600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr6:36028600-36050200	Weak transcription	Spleen	Spleen
18	chr6:36028800-36043200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:36029200-36048000	Weak transcription	NH-A	brain
20	chr6:36029600-36041600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr6:36029600-36041800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:36029600-36043400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr6:36029600-36047600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr6:36029800-36043800	Weak transcription	HMEC	breast
25	chr6:36030000-36035200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr6:36030200-36034400	Weak transcription	HUVEC	blood vessel
27	chr6:36030200-36042400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:36030600-36034400	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr6:36030800-36034000	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr6:36030800-36036000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr6:36030800-36043200	Weak transcription	Fetal Muscle Leg	muscle
32	chr6:36031000-36042600	Weak transcription	Fetal Muscle Trunk	muscle
33	chr6:36031200-36035000	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr6:36031200-36036400	Enhancers	Liver	Liver
35	chr6:36031400-36034400	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr6:36031400-36040600	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr6:36031600-36036000	Enhancers	Adipose Nuclei	Adipose
38	chr6:36031600-36036200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:36031600-36037200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:36031600-36037800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr6:36031600-36041200	Weak transcription	Dnd41	blood
42	chr6:36031800-36035200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:36031800-36036000	Enhancers	Osteobl	bone
44	chr6:36032000-36034600	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr6:36032200-36034200	Enhancers	A549	lung
46	chr6:36032200-36034400	Genic enhancers	Primary neutrophils fromperipheralblood	blood
47	chr6:36032200-36034400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr6:36032200-36035600	Enhancers	Breast Myoepithelial Primary Cells	Breast
49	chr6:36032200-36035600	Enhancers	Stomach Mucosa	stomach
50	chr6:36032200-36035800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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