Variant report

Variant	rs16884919
Chromosome Location	chr6:36071517-36071518
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36066609..36068924-chr6:36070990..36074057,3	MCF-7	breast:
2	chr6:36052124..36054923-chr6:36068952..36071940,2	K562	blood:
3	chr6:36069399..36071827-chr6:36084896..36086577,2	K562	blood:
4	chr6:36066380..36072646-chr6:36077457..36080962,6	K562	blood:
5	chr6:36068703..36074391-chr6:36083766..36088093,5	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10456082	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs10456438	0.92[ASN][1000 genomes]
rs12204910	0.83[ASN][1000 genomes]
rs12206103	0.81[ASN][1000 genomes]
rs16883819	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883860	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16883989	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884628	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884660	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16884694	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[EUR][1000 genomes]
rs16884857	1.00[EUR][1000 genomes]
rs16884906	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1967966	0.97[EUR][1000 genomes]
rs2237094	0.88[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs2237096	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3730327	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3730366	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3761980	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3804451	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41271263	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55878630	0.83[ASN][1000 genomes]
rs56044978	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56059109	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56133220	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56156688	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56327416	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56362075	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56413204	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56715462	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58390233	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58583792	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58690654	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60100837	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60342497	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60481532	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60909394	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61195139	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61212706	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61364424	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61763101	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6457878	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6908622	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6910685	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6914570	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921999	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6930333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6932598	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6934216	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6936327	1.00[EUR][1000 genomes]
rs73407868	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407870	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407871	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73407876	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73409842	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73729685	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73729698	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73730437	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73730440	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73730459	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7745082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745536	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7745927	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7747846	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7748078	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7752459	1.00[CEU][hapmap];1.00[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7759175	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7760405	1.00[CEU][hapmap];0.86[CHB][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes]
rs7760578	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7761118	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762483	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764494	1.00[CEU][hapmap];0.86[CHB][hapmap];0.97[EUR][1000 genomes]
rs7766032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7769981	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7770183	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7771484	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs7772088	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7775290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3363467	chr6:35820920-36222197	Enhancers Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs16884919	SLC26A8	cis	Nerve Tibial	GTEx
rs16884919	SLC26A8	cis	Adipose Subcutaneous	GTEx
rs16884919	SLC26A8	cis	multi-tissue	Pritchard
rs16884919	SLC26A8	cis	Thyroid	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36022000-36088800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:36051600-36088800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:36051800-36075800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:36052000-36075200	Weak transcription	Right Ventricle	heart
5	chr6:36060200-36075000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:36060600-36080800	Weak transcription	Ovary	ovary
7	chr6:36060800-36072000	Weak transcription	Brain Germinal Matrix	brain
8	chr6:36063000-36074800	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr6:36063200-36080600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr6:36063400-36080600	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr6:36063600-36080800	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr6:36064600-36076000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:36065400-36082600	Weak transcription	Stomach Mucosa	stomach
14	chr6:36065600-36075600	Weak transcription	A549	lung
15	chr6:36066600-36071600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr6:36067000-36082800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:36067200-36072800	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr6:36067200-36074200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:36067200-36075000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:36067400-36081000	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr6:36067600-36080000	Strong transcription	Dnd41	blood
22	chr6:36067800-36072400	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:36067800-36073800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:36067800-36075400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:36067800-36079600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:36068000-36072800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:36068000-36078800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr6:36068000-36091400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr6:36068200-36072400	Weak transcription	Brain Substantia Nigra	brain
30	chr6:36068200-36073200	Genic enhancers	Fetal Thymus	thymus
31	chr6:36068200-36076600	Weak transcription	Small Intestine	intestine
32	chr6:36068200-36081200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr6:36068400-36074000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr6:36068400-36075200	Weak transcription	HUVEC	blood vessel
35	chr6:36068600-36078000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:36068600-36079600	Strong transcription	HepG2	liver
37	chr6:36068800-36072200	Strong transcription	NH-A	brain
38	chr6:36068800-36072400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:36068800-36072800	Strong transcription	K562	blood
40	chr6:36068800-36079800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr6:36069000-36072800	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr6:36069000-36072800	Genic enhancers	Thymus	Thymus
43	chr6:36069000-36076200	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr6:36069000-36081400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:36069200-36073000	Strong transcription	Fetal Intestine Small	intestine
46	chr6:36069200-36074400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr6:36069200-36081800	Strong transcription	Fetal Intestine Large	intestine
48	chr6:36069400-36072000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr6:36069400-36073000	Strong transcription	HUES6 Cell Line	embryonic stem cell
50	chr6:36069400-36074200	Strong transcription	Duodenum Smooth Muscle	Duodenum

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