Variant report

Variant	rs16887227
Chromosome Location	chr8:116252506-116252507
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs16887084	1.00[EUR][1000 genomes]
rs16887087	1.00[EUR][1000 genomes]
rs16887088	1.00[EUR][1000 genomes]
rs16887089	1.00[EUR][1000 genomes]
rs16887091	1.00[EUR][1000 genomes]
rs16887093	1.00[EUR][1000 genomes]
rs16887094	1.00[EUR][1000 genomes]
rs16887101	1.00[EUR][1000 genomes]
rs16887122	1.00[EUR][1000 genomes]
rs16887184	1.00[EUR][1000 genomes]
rs16892724	1.00[EUR][1000 genomes]
rs56085718	1.00[EUR][1000 genomes]
rs56362641	1.00[EUR][1000 genomes]
rs56365429	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56822520	1.00[EUR][1000 genomes]
rs57918191	1.00[EUR][1000 genomes]
rs58131718	1.00[EUR][1000 genomes]
rs58132283	1.00[EUR][1000 genomes]
rs6988299	1.00[AMR][1000 genomes]
rs73703156	1.00[EUR][1000 genomes]
rs73703161	1.00[EUR][1000 genomes]
rs73703162	1.00[EUR][1000 genomes]
rs73703163	1.00[EUR][1000 genomes]
rs73703164	1.00[EUR][1000 genomes]
rs73703165	1.00[EUR][1000 genomes]
rs73703166	1.00[EUR][1000 genomes]
rs73703167	1.00[EUR][1000 genomes]
rs73703169	1.00[EUR][1000 genomes]
rs73703170	1.00[EUR][1000 genomes]
rs73703172	1.00[EUR][1000 genomes]
rs73703187	1.00[EUR][1000 genomes]
rs73703198	1.00[EUR][1000 genomes]
rs73703199	1.00[EUR][1000 genomes]
rs73705133	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891373	chr8:115351857-116295809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv891399	chr8:116037798-116295809	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv891400	chr8:116139213-116373329	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv831431	chr8:116209344-116402304	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1024074	chr8:116211511-116387442	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:116250200-116253200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:116252400-116255000	Enhancers	Primary T cells from cord blood	blood

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