Variant report

Variant	rs73703172
Chromosome Location	chr8:116202058-116202059
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:116197204..116199535-chr8:116202002..116204083,2	MCF-7	breast:
2	chr8:116197091..116200038-chr8:116201920..116204912,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16887084	1.00[EUR][1000 genomes]
rs16887087	1.00[EUR][1000 genomes]
rs16887088	1.00[EUR][1000 genomes]
rs16887089	1.00[EUR][1000 genomes]
rs16887091	1.00[EUR][1000 genomes]
rs16887093	1.00[EUR][1000 genomes]
rs16887094	1.00[EUR][1000 genomes]
rs16887101	1.00[EUR][1000 genomes]
rs16887122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16887184	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16887227	1.00[EUR][1000 genomes]
rs16892724	1.00[EUR][1000 genomes]
rs56085718	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56362641	1.00[EUR][1000 genomes]
rs56822520	1.00[EUR][1000 genomes]
rs57918191	1.00[EUR][1000 genomes]
rs58131718	1.00[EUR][1000 genomes]
rs58132283	1.00[EUR][1000 genomes]
rs73703156	1.00[EUR][1000 genomes]
rs73703161	1.00[EUR][1000 genomes]
rs73703162	1.00[EUR][1000 genomes]
rs73703163	1.00[EUR][1000 genomes]
rs73703164	1.00[EUR][1000 genomes]
rs73703165	1.00[EUR][1000 genomes]
rs73703166	1.00[EUR][1000 genomes]
rs73703167	1.00[EUR][1000 genomes]
rs73703169	1.00[EUR][1000 genomes]
rs73703170	1.00[EUR][1000 genomes]
rs73703187	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73703198	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73703199	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv611976	chr8:115261134-116223865	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv891373	chr8:115351857-116295809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv891395	chr8:115642536-116222842	Enhancers Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv891399	chr8:116037798-116295809	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv891400	chr8:116139213-116373329	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:116196800-116215200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:116197600-116215600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr8:116201600-116202400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr8:116202000-116202600	Enhancers	Brain Substantia Nigra	brain

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