Variant report

Variant	rs56362641
Chromosome Location	chr8:116235598-116235599
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16887084	1.00[EUR][1000 genomes]
rs16887087	1.00[EUR][1000 genomes]
rs16887088	1.00[EUR][1000 genomes]
rs16887089	1.00[EUR][1000 genomes]
rs16887091	1.00[EUR][1000 genomes]
rs16887093	1.00[EUR][1000 genomes]
rs16887094	1.00[EUR][1000 genomes]
rs16887101	1.00[EUR][1000 genomes]
rs16887122	1.00[EUR][1000 genomes]
rs16887184	1.00[EUR][1000 genomes]
rs16887227	1.00[EUR][1000 genomes]
rs16892724	1.00[EUR][1000 genomes]
rs56085718	1.00[EUR][1000 genomes]
rs56822520	1.00[EUR][1000 genomes]
rs57918191	1.00[EUR][1000 genomes]
rs58131718	1.00[EUR][1000 genomes]
rs58132283	1.00[EUR][1000 genomes]
rs73703156	1.00[EUR][1000 genomes]
rs73703161	1.00[EUR][1000 genomes]
rs73703162	1.00[EUR][1000 genomes]
rs73703163	1.00[EUR][1000 genomes]
rs73703164	1.00[EUR][1000 genomes]
rs73703165	1.00[EUR][1000 genomes]
rs73703166	1.00[EUR][1000 genomes]
rs73703167	1.00[EUR][1000 genomes]
rs73703169	1.00[EUR][1000 genomes]
rs73703170	1.00[EUR][1000 genomes]
rs73703172	1.00[EUR][1000 genomes]
rs73703187	1.00[EUR][1000 genomes]
rs73703198	1.00[EUR][1000 genomes]
rs73703199	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891373	chr8:115351857-116295809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv891399	chr8:116037798-116295809	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv891400	chr8:116139213-116373329	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv831431	chr8:116209344-116402304	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1024074	chr8:116211511-116387442	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:116230200-116236000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr8:116230400-116236000	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr8:116230600-116235600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr8:116230600-116236000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr8:116231200-116236000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr8:116231400-116237600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:116233800-116235600	Enhancers	Primary T cells fromperipheralblood	blood
8	chr8:116233800-116236000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr8:116234000-116235600	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr8:116234000-116236000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr8:116234200-116235600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr8:116234200-116235800	Enhancers	Primary B cells from cord blood	blood
13	chr8:116234200-116235800	Enhancers	Primary B cells from peripheral blood	blood
14	chr8:116234400-116235600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr8:116234400-116235600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr8:116234400-116235600	Enhancers	Duodenum Mucosa	Duodenum
17	chr8:116234400-116235600	Flanking Active TSS	Dnd41	blood
18	chr8:116234400-116236000	Enhancers	Primary T cells from cord blood	blood
19	chr8:116234600-116235600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr8:116234600-116235600	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr8:116234600-116235800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr8:116234600-116236600	Enhancers	Muscle Satellite Cultured Cells	--
23	chr8:116235000-116235600	Weak transcription	Primary hematopoietic stem cells	blood
24	chr8:116235000-116236000	Enhancers	Osteobl	bone
25	chr8:116235200-116235600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
26	chr8:116235200-116235800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr8:116235400-116235600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr8:116235400-116235600	Enhancers	NH-A	brain
29	chr8:116235400-116235800	Flanking Active TSS	GM12878-XiMat	blood

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