Variant report

Variant	rs73703170
Chromosome Location	chr8:116197283-116197284
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:116197091..116200038-chr8:116201920..116204912,2	MCF-7	breast:
2	chr8:116197204..116199535-chr8:116202002..116204083,2	MCF-7	breast:
3	chr8:116197006..116199326-chr8:116204502..116206471,3	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs16887084	1.00[EUR][1000 genomes]
rs16887087	1.00[EUR][1000 genomes]
rs16887088	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16887089	1.00[EUR][1000 genomes]
rs16887091	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16887093	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16887094	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16887101	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16887122	1.00[EUR][1000 genomes]
rs16887184	1.00[EUR][1000 genomes]
rs16887227	1.00[EUR][1000 genomes]
rs16892724	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56085718	1.00[EUR][1000 genomes]
rs56362641	1.00[EUR][1000 genomes]
rs56822520	1.00[EUR][1000 genomes]
rs57918191	1.00[EUR][1000 genomes]
rs58131718	1.00[EUR][1000 genomes]
rs58132283	1.00[EUR][1000 genomes]
rs73703156	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73703161	1.00[EUR][1000 genomes]
rs73703162	1.00[EUR][1000 genomes]
rs73703163	1.00[EUR][1000 genomes]
rs73703164	1.00[EUR][1000 genomes]
rs73703165	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73703166	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73703167	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73703169	1.00[EUR][1000 genomes]
rs73703172	1.00[EUR][1000 genomes]
rs73703187	1.00[EUR][1000 genomes]
rs73703198	1.00[EUR][1000 genomes]
rs73703199	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv611976	chr8:115261134-116223865	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv891373	chr8:115351857-116295809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv891395	chr8:115642536-116222842	Enhancers Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv891399	chr8:116037798-116295809	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv891400	chr8:116139213-116373329	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1022357	chr8:116162223-116198759	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:116185600-116197400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:116190800-116197400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:116195800-116197800	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr8:116196800-116197600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr8:116196800-116197800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:116196800-116201200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr8:116196800-116215200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:116197000-116201600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr8:116197200-116197600	Enhancers	HMEC	breast
10	chr8:116197200-116197800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr8:116197200-116198200	Flanking Active TSS	GM12878-XiMat	blood

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