Variant report

Variant	rs16891213
Chromosome Location	chr8:119592918-119592919
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10101026	1.00[ASW][hapmap];0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs16891204	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55791185	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56006234	0.83[EUR][1000 genomes]
rs57416344	0.81[EUR][1000 genomes]
rs7015718	0.86[CEU][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[EUR][1000 genomes]
rs72678158	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72678163	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9632827	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv6362	chr8:119554736-119599269	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16891213	Hs.453941	cis	multi-tissue	Pritchard
rs16891213	MAL2	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119580000-119595800	Weak transcription	Fetal Brain Male	brain
2	chr8:119580600-119593400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr8:119580600-119596000	Weak transcription	Gastric	stomach
4	chr8:119585800-119602400	Weak transcription	Pancreas	Pancrea
5	chr8:119586000-119599200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:119587400-119599600	Weak transcription	Left Ventricle	heart
7	chr8:119589200-119598000	Weak transcription	Brain Angular Gyrus	brain
8	chr8:119590000-119598000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:119590400-119596600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr8:119590600-119599200	Weak transcription	GM12878-XiMat	blood
11	chr8:119591200-119594400	Weak transcription	Primary B cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links