Variant report

Variant	rs72678163
Chromosome Location	chr8:119588930-119588931
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:41398945..41402179-chr8:119586621..119589621,3	K562	blood:
2	chr8:119572899..119575048-chr8:119586649..119588943,2	MCF-7	breast:
3	chr17:41399379..41402179-chr8:119586621..119589601,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10101026	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16891204	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16891213	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55791185	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56006234	1.00[EUR][1000 genomes]
rs57416344	0.98[EUR][1000 genomes]
rs7015718	1.00[EUR][1000 genomes]
rs72678157	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs72678158	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72678164	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv6362	chr8:119554736-119599269	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119580000-119589000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr8:119580000-119595800	Weak transcription	Fetal Brain Male	brain
3	chr8:119580400-119589400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr8:119580600-119593400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr8:119580600-119596000	Weak transcription	Gastric	stomach
6	chr8:119585800-119589800	Enhancers	Brain Substantia Nigra	brain
7	chr8:119585800-119602400	Weak transcription	Pancreas	Pancrea
8	chr8:119586000-119599200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:119587000-119589200	Enhancers	Brain Angular Gyrus	brain
10	chr8:119587400-119599600	Weak transcription	Left Ventricle	heart
11	chr8:119587800-119590600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr8:119588000-119589000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr8:119588000-119589000	Weak transcription	Fetal Lung	lung
14	chr8:119588400-119590400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr8:119588600-119589000	Enhancers	H9 Cell Line	embryonic stem cell
16	chr8:119588600-119590000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr8:119588600-119590000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr8:119588600-119590200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr8:119588600-119590200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr8:119588600-119590800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr8:119588800-119589000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr8:119588800-119589400	ZNF genes & repeats	GM12878-XiMat	blood

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