Variant report

Variant	rs55791185
Chromosome Location	chr8:119568492-119568493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10101026	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891204	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891213	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56006234	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57416344	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62531916	0.83[ASN][1000 genomes]
rs62531923	0.83[ASN][1000 genomes]
rs7015718	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72678157	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72678158	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72678163	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv6362	chr8:119554736-119599269	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119567000-119568600	Enhancers	Fetal Lung	lung
2	chr8:119567200-119568600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
3	chr8:119567400-119568800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:119568000-119568600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
5	chr8:119568200-119568600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
6	chr8:119568200-119568600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
7	chr8:119568200-119568600	Weak transcription	Brain Substantia Nigra	brain
8	chr8:119568200-119572400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr8:119568400-119571000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:119568400-119576000	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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