Variant report

Variant	rs57416344
Chromosome Location	chr8:119561032-119561033
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10101026	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891204	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891213	0.81[EUR][1000 genomes]
rs55791185	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56006234	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62531916	0.83[ASN][1000 genomes]
rs62531923	0.83[ASN][1000 genomes]
rs7015718	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72678157	0.92[EUR][1000 genomes]
rs72678158	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72678163	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv6362	chr8:119554736-119599269	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119559600-119561600	Enhancers	Stomach Mucosa	stomach
2	chr8:119560400-119561200	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr8:119560600-119561200	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr8:119560600-119561200	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr8:119560600-119561200	Active TSS	Primary T cells fromperipheralblood	blood
6	chr8:119560600-119561200	Active TSS	Primary T killer naive cells fromperipheralblood	blood
7	chr8:119560600-119561200	Active TSS	Duodenum Mucosa	Duodenum
8	chr8:119560600-119561600	Active TSS	Rectal Mucosa Donor 31	rectum
9	chr8:119560800-119561200	Active TSS	H9 Cell Line	embryonic stem cell
10	chr8:119560800-119561200	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr8:119560800-119561200	Active TSS	Rectal Smooth Muscle	rectum
12	chr8:119560800-119561200	Active TSS	Hela-S3	cervix
13	chr8:119560800-119561200	Active TSS	HepG2	liver
14	chr8:119560800-119567000	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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