Variant report

Variant	rs16892560
Chromosome Location	chr4:15916110-15916111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16892572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16892579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16892583	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16892587	0.89[EUR][1000 genomes]
rs16892595	0.84[EUR][1000 genomes]
rs2108872	0.81[EUR][1000 genomes]
rs2108873	0.81[EUR][1000 genomes]
rs28460848	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55837944	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs56082606	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58934663	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61351267	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv878715	chr4:15840839-15947493	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv980398	chr4:15909547-15927288	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv878716	chr4:15911031-15947493	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15911600-15920200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:15911600-15924000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:15912600-15916200	Enhancers	NHEK	skin
4	chr4:15913600-15924400	Enhancers	HMEC	breast
5	chr4:15914000-15916400	Enhancers	Osteobl	bone
6	chr4:15914400-15917200	Enhancers	Hela-S3	cervix
7	chr4:15914600-15916200	Weak transcription	Esophagus	oesophagus
8	chr4:15915000-15916400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr4:15915000-15921400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr4:15915200-15916400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:15915200-15916400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:15915200-15917400	Weak transcription	Placenta	Placenta
13	chr4:15915400-15922000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:15915600-15918400	Weak transcription	NHDF-Ad	bronchial
15	chr4:15915600-15919400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:15915600-15920000	Weak transcription	Gastric	stomach
17	chr4:15915800-15916200	Flanking Active TSS	NH-A	brain
18	chr4:15915800-15918800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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