Variant report

Variant	rs56082606
Chromosome Location	chr4:15915304-15915305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16892560	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16892572	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16892579	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16892583	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16892587	0.89[EUR][1000 genomes]
rs16892595	0.84[EUR][1000 genomes]
rs2108872	0.81[EUR][1000 genomes]
rs2108873	0.81[EUR][1000 genomes]
rs28460848	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs55837944	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs58934663	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61351267	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv878715	chr4:15840839-15947493	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv980398	chr4:15909547-15927288	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv878716	chr4:15911031-15947493	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15911600-15920200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:15911600-15924000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:15912600-15916200	Enhancers	NHEK	skin
4	chr4:15913600-15915600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:15913600-15924400	Enhancers	HMEC	breast
6	chr4:15913800-15915400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr4:15913800-15915800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr4:15913800-15915800	Enhancers	NH-A	brain
9	chr4:15914000-15915400	Enhancers	Stomach Mucosa	stomach
10	chr4:15914000-15916400	Enhancers	Osteobl	bone
11	chr4:15914200-15915400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:15914200-15915800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:15914400-15915600	Enhancers	HSMM	muscle
14	chr4:15914400-15915800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr4:15914400-15915800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:15914400-15917200	Enhancers	Hela-S3	cervix
17	chr4:15914600-15915600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:15914600-15915600	Enhancers	NHDF-Ad	bronchial
19	chr4:15914600-15915600	Enhancers	NHLF	lung
20	chr4:15914600-15916000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:15914600-15916000	Enhancers	HUVEC	blood vessel
22	chr4:15914600-15916200	Weak transcription	Esophagus	oesophagus
23	chr4:15914800-15915400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:15915000-15915600	Enhancers	Sigmoid Colon	Sigmoid Colon
25	chr4:15915000-15916400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr4:15915000-15921400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr4:15915200-15915400	Flanking Active TSS	A549	lung
28	chr4:15915200-15915400	Enhancers	HSMMtube	muscle
29	chr4:15915200-15916400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr4:15915200-15916400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr4:15915200-15917400	Weak transcription	Placenta	Placenta

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