Variant report

Variant	rs16892587
Chromosome Location	chr4:15922502-15922503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CD38-4	chr4:15921122-15923370	NONHSAT095650

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16892560	0.89[EUR][1000 genomes]
rs16892572	0.89[EUR][1000 genomes]
rs16892579	0.89[EUR][1000 genomes]
rs16892583	0.89[EUR][1000 genomes]
rs16892595	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2108872	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2108873	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28460848	0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55837944	0.86[EUR][1000 genomes]
rs56082606	0.89[EUR][1000 genomes]
rs58934663	0.89[EUR][1000 genomes]
rs61351267	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv878715	chr4:15840839-15947493	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
4	nsv980398	chr4:15909547-15927288	Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv878716	chr4:15911031-15947493	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv878717	chr4:15920423-15950731	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
7	esv3366706	chr4:15921154-15924552	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv593769	chr4:15921471-15943140	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15911600-15924000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:15913600-15924400	Enhancers	HMEC	breast
3	chr4:15918400-15923800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:15920600-15923800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:15920600-15937600	Weak transcription	Esophagus	oesophagus
6	chr4:15921400-15922800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr4:15921400-15923800	Enhancers	NHDF-Ad	bronchial
8	chr4:15921800-15922600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr4:15921800-15923800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:15921800-15924000	Enhancers	NHLF	lung
11	chr4:15922000-15922600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:15922000-15923600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr4:15922000-15923600	Enhancers	HUVEC	blood vessel
14	chr4:15922000-15923800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr4:15922000-15923800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr4:15922000-15924400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:15922200-15922800	Flanking Active TSS	A549	lung
18	chr4:15922200-15923000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:15922200-15923600	Enhancers	Hela-S3	cervix
20	chr4:15922200-15924200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr4:15922400-15922600	Enhancers	Rectal Mucosa Donor 31	rectum
22	chr4:15922400-15922600	Flanking Active TSS	NHEK	skin
23	chr4:15922400-15923000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
24	chr4:15922400-15923000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr4:15922400-15923000	Flanking Active TSS	NH-A	brain
26	chr4:15922400-15923000	Flanking Active TSS	Osteobl	bone
27	chr4:15922400-15923400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr4:15922400-15923400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr4:15922400-15923400	Enhancers	Stomach Mucosa	stomach
30	chr4:15922400-15923400	Enhancers	HSMMtube	muscle
31	chr4:15922400-15923600	Enhancers	HSMM	muscle

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