Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10498928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12660894	0.81[EUR][1000 genomes]
rs12663931	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1321757	0.90[EUR][1000 genomes]
rs1407172	0.93[EUR][1000 genomes]
rs1575192	0.93[EUR][1000 genomes]
rs16893217	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16893279	1.00[YRI][hapmap];0.93[EUR][1000 genomes]
rs16893306	0.81[EUR][1000 genomes]
rs16893333	0.81[EUR][1000 genomes]
rs1830569	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1983728	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2298053	0.81[EUR][1000 genomes]
rs4374864	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59868018	0.93[EUR][1000 genomes]
rs6454221	0.93[EUR][1000 genomes]
rs6454224	0.93[EUR][1000 genomes]
rs6904624	0.93[EUR][1000 genomes]
rs7766591	0.93[EUR][1000 genomes]
rs9361830	0.93[EUR][1000 genomes]
rs9449347	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82285000-82286400	Enhancers	Fetal Stomach	stomach
2	chr6:82285000-82286400	Enhancers	Rectal Smooth Muscle	rectum
3	chr6:82285800-82286400	Enhancers	Small Intestine	intestine

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