Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10498928	0.93[EUR][1000 genomes]
rs12663931	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1321757	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1407172	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893217	0.93[EUR][1000 genomes]
rs16893244	0.93[EUR][1000 genomes]
rs16893279	0.87[EUR][1000 genomes]
rs1830569	0.93[EUR][1000 genomes]
rs1983728	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2753428	0.81[AMR][1000 genomes]
rs4374864	0.93[EUR][1000 genomes]
rs498482	0.86[AMR][1000 genomes]
rs511817	0.81[AMR][1000 genomes]
rs558708	1.00[AMR][1000 genomes]
rs59868018	0.87[EUR][1000 genomes]
rs6454221	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6454224	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904624	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7766591	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9361830	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449347	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82220400-82222200	Enhancers	Rectal Mucosa Donor 31	rectum

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