Variant report

Variant	rs2753428
Chromosome Location	chr6:82159226-82159227
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1321757	0.81[AMR][1000 genomes]
rs1407172	0.87[AMR][1000 genomes]
rs1575192	0.81[AMR][1000 genomes]
rs498482	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs511817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs558708	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6454221	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6454224	0.81[AMR][1000 genomes]
rs6904624	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7766591	0.87[AMR][1000 genomes]
rs9361830	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv34899	chr6:82090758-82161121	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv2757183	chr6:82098060-82161121	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv2759450	chr6:82098060-82161121	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
6	nsv7935	chr6:82136511-82174968	Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3475143	chr6:82144215-82179186	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	esv3475144	chr6:82144215-82179186	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
9	nsv442004	chr6:82147124-82171606	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv823765	chr6:82152910-82174129	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv2756172	chr6:82155881-82161081	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
12	nsv432937	chr6:82155881-82161081	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82157000-82159600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr6:82157800-82160000	Weak transcription	Stomach Mucosa	stomach
3	chr6:82159000-82159400	Enhancers	Hela-S3	cervix
4	chr6:82159200-82162400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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