Variant report

Variant	rs558708
Chromosome Location	chr6:82166443-82166444
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12663931	0.84[AMR][1000 genomes]
rs1321757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1407172	0.93[AMR][1000 genomes]
rs1575192	1.00[AMR][1000 genomes]
rs2753428	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs498482	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs511817	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6454221	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs6454224	1.00[AMR][1000 genomes]
rs6904624	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7766591	0.93[AMR][1000 genomes]
rs9361830	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv604087	chr6:81792413-82326091	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1032655	chr6:81942397-82225830	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv7935	chr6:82136511-82174968	Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3475143	chr6:82144215-82179186	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3475144	chr6:82144215-82179186	Enhancers Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv442004	chr6:82147124-82171606	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv823765	chr6:82152910-82174129	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82166200-82166800	Enhancers	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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