Variant report

Variant	rs16893324
Chromosome Location	chr8:90253290-90253291
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16892804	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4300049	0.83[AMR][1000 genomes]
rs4604491	0.83[AMR][1000 genomes]
rs58689602	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692956	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694719	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694724	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694787	0.90[AMR][1000 genomes]
rs73694975	0.80[AMR][1000 genomes]
rs73694977	0.80[AMR][1000 genomes]
rs73694982	1.00[AMR][1000 genomes]
rs73694984	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694986	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7816939	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1024956	chr8:90104423-90459539	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv539671	chr8:90104423-90459539	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90248600-90259600	Enhancers	Primary T helper cells PMA-I stimulated	--
2	chr8:90249200-90254000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr8:90249800-90253600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr8:90250000-90253600	Enhancers	Primary T cells from cord blood	blood
5	chr8:90250000-90259600	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr8:90250200-90253600	Enhancers	Primary T killer memory cells from peripheral blood	blood
7	chr8:90251400-90259400	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr8:90251800-90257400	Enhancers	Dnd41	blood
9	chr8:90252800-90253400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr8:90252800-90254800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr8:90253200-90253400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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