Variant report

Variant	rs58689602
Chromosome Location	chr8:90230460-90230461
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs16892804	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16893324	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4300049	0.83[AMR][1000 genomes]
rs4604491	0.83[AMR][1000 genomes]
rs73692905	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73692956	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694719	1.00[AMR][1000 genomes]
rs73694724	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694787	0.90[AMR][1000 genomes]
rs73694975	0.80[AMR][1000 genomes]
rs73694977	0.80[AMR][1000 genomes]
rs73694982	1.00[AMR][1000 genomes]
rs73694984	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73694986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73696418	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7816939	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1024956	chr8:90104423-90459539	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv539671	chr8:90104423-90459539	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1034759	chr8:90152834-90252502	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv821658	chr8:90199535-90245081	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90230200-90230800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
2	chr8:90230200-90230800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr8:90230400-90230600	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr8:90230400-90230800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
5	chr8:90230400-90230800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
6	chr8:90230400-90230800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr8:90230400-90231000	Enhancers	Primary T cells fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links