Variant report

Variant	rs4604491
Chromosome Location	chr8:90334490-90334491
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13261143	0.87[AFR][1000 genomes]
rs16892804	0.83[AMR][1000 genomes]
rs16893324	0.83[AMR][1000 genomes]
rs4300049	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4397449	1.00[ASN][1000 genomes]
rs4404961	1.00[ASN][1000 genomes]
rs58689602	0.83[AMR][1000 genomes]
rs7006831	0.89[AFR][1000 genomes]
rs73692905	0.83[AMR][1000 genomes]
rs73692956	0.83[AMR][1000 genomes]
rs73694719	0.83[AMR][1000 genomes]
rs73694724	0.83[AMR][1000 genomes]
rs73694982	0.83[AMR][1000 genomes]
rs73694984	0.83[AMR][1000 genomes]
rs73694986	0.83[AMR][1000 genomes]
rs73696418	0.83[AMR][1000 genomes]
rs7816939	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465735	chr8:89760311-90729507	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
2	nsv611714	chr8:89760311-90729507	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
3	nsv1024956	chr8:90104423-90459539	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv539671	chr8:90104423-90459539	Active TSS Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv1032886	chr8:90253748-90398240	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
6	nsv891178	chr8:90289326-90337010	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv891179	chr8:90307652-90335826	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv2757280	chr8:90321647-90338278	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv2759627	chr8:90321647-90338278	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv8364	chr8:90329693-90338164	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3692999	chr8:90330202-90337010	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
12	nsv818642	chr8:90330202-90337010	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv438068	chr8:90330854-90337010	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv437628	chr8:90331390-90339342	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90327600-90334600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:90333800-90335200	Enhancers	Primary hematopoietic stem cells	blood
3	chr8:90334000-90334800	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr8:90334000-90335000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:90334000-90335000	Enhancers	HUVEC	blood vessel
6	chr8:90334000-90335200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr8:90334000-90335800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr8:90334000-90336200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr8:90334200-90334600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr8:90334200-90334600	Enhancers	NHEK	skin
11	chr8:90334200-90334800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr8:90334200-90335000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr8:90334200-90335000	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr8:90334200-90335000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr8:90334200-90335000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr8:90334200-90335000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:90334200-90335200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr8:90334200-90335200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr8:90334200-90335200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr8:90334200-90335200	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr8:90334200-90335200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:90334200-90335200	Enhancers	NH-A	brain
23	chr8:90334200-90336400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr8:90334400-90334800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr8:90334400-90334800	Enhancers	Hela-S3	cervix
26	chr8:90334400-90335000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr8:90334400-90335000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr8:90334400-90335000	Enhancers	Dnd41	blood
29	chr8:90334400-90335200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr8:90334400-90335200	Enhancers	HMEC	breast
31	chr8:90334400-90335200	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links