Variant report

Variant	rs16893726
Chromosome Location	chr6:82699293-82699294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12110627	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16893671	1.00[AMR][1000 genomes]
rs16893697	1.00[AMR][1000 genomes]
rs16893747	1.00[EUR][1000 genomes]
rs16893795	1.00[EUR][1000 genomes]
rs4142306	1.00[EUR][1000 genomes]
rs55712429	1.00[EUR][1000 genomes]
rs60442230	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73750676	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73750684	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73750688	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73750689	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73750691	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3358208	chr6:82677282-82700658	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82695200-82704400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:82698800-82704400	Weak transcription	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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