Variant report

Variant	rs73750688
Chromosome Location	chr6:82705912-82705913
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:82460131..82462591-chr6:82705009..82708552,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000112773	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12110627	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16893726	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16893747	1.00[EUR][1000 genomes]
rs16893795	1.00[EUR][1000 genomes]
rs4142306	1.00[EUR][1000 genomes]
rs55712429	1.00[EUR][1000 genomes]
rs60442230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73750676	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73750684	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73750689	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73750691	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3326844	chr6:82705651-82706038	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82703600-82708000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:82704400-82706400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:82704400-82707000	Enhancers	Hela-S3	cervix
4	chr6:82704400-82708200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr6:82704400-82708200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:82704400-82708200	Enhancers	HSMM	muscle
7	chr6:82704400-82709400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:82704600-82707200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:82705000-82706000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:82705000-82706600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:82705000-82706800	Enhancers	Pancreatic Islets	Pancreatic Islet
12	chr6:82705000-82708400	Enhancers	NHLF	lung
13	chr6:82705000-82709600	Enhancers	NH-A	brain
14	chr6:82705200-82706000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:82705200-82706400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr6:82705200-82706400	Weak transcription	HSMMtube	muscle
17	chr6:82705200-82707000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:82705400-82706000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:82705400-82706400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:82705400-82706600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:82705400-82707800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr6:82705400-82708200	Enhancers	K562	blood
23	chr6:82705400-82710800	Enhancers	HMEC	breast
24	chr6:82705600-82706200	Flanking Active TSS	NHDF-Ad	bronchial
25	chr6:82705600-82707200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr6:82705800-82707000	Enhancers	NHEK	skin
27	chr6:82705800-82707000	Enhancers	Osteobl	bone
28	chr6:82705800-82707200	Weak transcription	A549	lung
29	chr6:82705800-82708000	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr6:82705800-82709000	Weak transcription	HepG2	liver

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