Variant report

Variant	rs55712429
Chromosome Location	chr6:82737737-82737738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12110627	1.00[EUR][1000 genomes]
rs16893726	1.00[EUR][1000 genomes]
rs16893747	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893775	0.99[ASN][1000 genomes]
rs16893795	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4142306	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60442230	1.00[EUR][1000 genomes]
rs73750676	1.00[EUR][1000 genomes]
rs73750684	1.00[EUR][1000 genomes]
rs73750688	1.00[EUR][1000 genomes]
rs73750689	1.00[EUR][1000 genomes]
rs73750691	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034389	chr6:82721569-82746599	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82732400-82748600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:82732800-82738600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:82733000-82740400	Weak transcription	HepG2	liver
4	chr6:82733200-82739800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:82733200-82743800	Weak transcription	HSMM	muscle
6	chr6:82733800-82740000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr6:82734000-82739600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:82735600-82740200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:82735600-82740200	Weak transcription	NHDF-Ad	bronchial
10	chr6:82735600-82740600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:82736600-82739200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:82736600-82743200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:82737200-82739600	Weak transcription	HMEC	breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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