Variant report

Variant	rs4142306
Chromosome Location	chr6:82727112-82727113
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12110627	1.00[EUR][1000 genomes]
rs16893726	1.00[EUR][1000 genomes]
rs16893747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16893775	0.99[ASN][1000 genomes]
rs16893795	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55712429	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60442230	1.00[EUR][1000 genomes]
rs73750676	1.00[EUR][1000 genomes]
rs73750684	1.00[EUR][1000 genomes]
rs73750688	1.00[EUR][1000 genomes]
rs73750689	1.00[EUR][1000 genomes]
rs73750691	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020783	chr6:82720632-82732325	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021793	chr6:82720632-82737456	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1034389	chr6:82721569-82746599	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1020964	chr6:82725168-82737456	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82721600-82727600	Enhancers	HUVEC	blood vessel
2	chr6:82722400-82728200	Enhancers	Hela-S3	cervix
3	chr6:82722800-82727600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr6:82722800-82728000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:82723000-82727800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:82723000-82728400	Enhancers	HMEC	breast
7	chr6:82723600-82727800	Enhancers	HSMM	muscle
8	chr6:82724000-82728000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:82724200-82727800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:82725000-82727400	Enhancers	HepG2	liver
11	chr6:82725000-82728200	Weak transcription	Psoas Muscle	Psoas
12	chr6:82725200-82731600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:82725400-82728200	Enhancers	NHDF-Ad	bronchial
14	chr6:82725400-82731800	Weak transcription	NH-A	brain
15	chr6:82725600-82727800	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr6:82725600-82728400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr6:82725600-82728600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:82726000-82727200	Enhancers	Fetal Heart	heart
19	chr6:82726000-82727400	Enhancers	Ovary	ovary
20	chr6:82726000-82727600	Enhancers	Right Atrium	heart
21	chr6:82726000-82728200	Enhancers	Fetal Intestine Large	intestine
22	chr6:82726000-82728400	Enhancers	Adipose Nuclei	Adipose
23	chr6:82726200-82727200	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr6:82726200-82727200	Enhancers	Stomach Smooth Muscle	stomach
25	chr6:82726200-82727800	Enhancers	NHEK	skin
26	chr6:82726200-82728000	Enhancers	Colon Smooth Muscle	Colon
27	chr6:82726200-82728200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr6:82726200-82728400	Enhancers	Osteobl	bone
29	chr6:82726400-82727400	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr6:82726400-82727800	Enhancers	HSMMtube	muscle
31	chr6:82726600-82727200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr6:82726600-82727200	Weak transcription	Left Ventricle	heart
33	chr6:82726600-82727600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:82726800-82727200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr6:82726800-82727200	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr6:82726800-82727200	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr6:82726800-82727200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr6:82726800-82727200	Enhancers	Rectal Smooth Muscle	rectum
39	chr6:82726800-82727400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr6:82726800-82727400	Enhancers	Placenta Amnion	Placenta Amnion
41	chr6:82726800-82727600	Enhancers	HUES6 Cell Line	embryonic stem cell
42	chr6:82726800-82727600	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr6:82726800-82727800	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr6:82726800-82727800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:82726800-82727800	Enhancers	Fetal Intestine Small	intestine
46	chr6:82726800-82727800	Enhancers	Placenta	Placenta
47	chr6:82726800-82728000	Enhancers	NHLF	lung
48	chr6:82727000-82727200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr6:82727000-82727400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:82727000-82727400	Enhancers	A549	lung

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