Variant report

Variant	rs16893775
Chromosome Location	chr6:82732585-82732586
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16893747	0.99[ASN][1000 genomes]
rs16893795	0.95[ASN][1000 genomes]
rs4142306	0.99[ASN][1000 genomes]
rs4706911	1.00[CEU][hapmap]
rs55712429	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021793	chr6:82720632-82737456	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1034389	chr6:82721569-82746599	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1020964	chr6:82725168-82737456	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82728000-82733200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:82729600-82733000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr6:82731200-82733800	Enhancers	HMEC	breast
4	chr6:82731200-82734000	Enhancers	HUVEC	blood vessel
5	chr6:82731400-82733400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:82731400-82733600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr6:82731400-82733800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:82731600-82733000	Enhancers	Fetal Intestine Large	intestine
9	chr6:82731600-82733400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:82731600-82733400	Enhancers	Hela-S3	cervix
11	chr6:82731600-82734000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:82731800-82733000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:82731800-82733200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr6:82731800-82733200	Enhancers	Fetal Intestine Small	intestine
15	chr6:82731800-82733200	Enhancers	NH-A	brain
16	chr6:82731800-82733200	Enhancers	NHDF-Ad	bronchial
17	chr6:82732000-82732800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr6:82732000-82732800	Enhancers	Placenta	Placenta
19	chr6:82732000-82733000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr6:82732000-82733000	Enhancers	HepG2	liver
21	chr6:82732000-82733200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:82732000-82733200	Enhancers	HSMM	muscle
23	chr6:82732000-82733400	Enhancers	NHLF	lung
24	chr6:82732000-82733400	Enhancers	Osteobl	bone
25	chr6:82732200-82732600	Enhancers	NHEK	skin
26	chr6:82732200-82732800	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr6:82732200-82732800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr6:82732200-82732800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr6:82732200-82732800	Enhancers	HSMMtube	muscle
30	chr6:82732200-82733000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr6:82732200-82733000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:82732200-82733000	Enhancers	Placenta Amnion	Placenta Amnion
33	chr6:82732200-82733400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:82732400-82732600	Enhancers	Fetal Heart	heart
35	chr6:82732400-82732800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:82732400-82732800	Active TSS	A549	lung
37	chr6:82732400-82748600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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