Variant report

Variant	rs16895786
Chromosome Location	chr8:122630641-122630642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122629140..122631434-chr8:122633732..122636150,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16895925	1.00[AMR][1000 genomes]
rs16895952	1.00[AMR][1000 genomes]
rs16895987	1.00[AMR][1000 genomes]
rs16896014	1.00[AMR][1000 genomes]
rs16896147	1.00[AMR][1000 genomes]
rs16896211	1.00[AMR][1000 genomes]
rs57565988	1.00[AMR][1000 genomes]
rs57808767	1.00[AMR][1000 genomes]
rs58030477	1.00[AMR][1000 genomes]
rs58941677	1.00[AMR][1000 genomes]
rs60554881	1.00[AMR][1000 genomes]
rs60768551	1.00[AMR][1000 genomes]
rs73320629	1.00[AMR][1000 genomes]
rs73320654	1.00[AMR][1000 genomes]
rs73320659	1.00[AMR][1000 genomes]
rs73320675	1.00[AMR][1000 genomes]
rs73320694	1.00[AMR][1000 genomes]
rs73322724	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033501	chr8:122436332-122758651	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831446	chr8:122535039-122711959	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122613000-122631800	Weak transcription	A549	lung
2	chr8:122615200-122644000	Weak transcription	Fetal Brain Male	brain
3	chr8:122616000-122640200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:122617800-122632000	Weak transcription	Fetal Stomach	stomach
5	chr8:122624400-122631000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:122624800-122640800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr8:122626800-122634400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:122626800-122643800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr8:122627000-122636200	Weak transcription	NH-A	brain
10	chr8:122627200-122632000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr8:122627200-122632000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr8:122627400-122631800	Weak transcription	Fetal Muscle Leg	muscle
13	chr8:122627400-122649800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr8:122628200-122632400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:122628800-122631800	Weak transcription	Fetal Kidney	kidney
16	chr8:122629400-122632600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:122629600-122630800	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr8:122629600-122631800	Strong transcription	Osteobl	bone
19	chr8:122629600-122632000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr8:122629800-122631800	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr8:122629800-122631800	Strong transcription	HSMM	muscle
22	chr8:122629800-122631800	Weak transcription	NHLF	lung
23	chr8:122629800-122632000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr8:122629800-122632200	Weak transcription	Fetal Lung	lung
25	chr8:122629800-122641000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr8:122630000-122630800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr8:122630200-122634200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr8:122630400-122632400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:122630400-122633200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr8:122630600-122631600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr8:122630600-122631800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr8:122630600-122631800	Weak transcription	NHDF-Ad	bronchial
33	chr8:122630600-122636400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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