Variant report

Variant	rs16895987
Chromosome Location	chr8:122776836-122776837
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16895786	1.00[AMR][1000 genomes]
rs16895912	0.87[AFR][1000 genomes]
rs16895925	1.00[AMR][1000 genomes]
rs16895952	1.00[AMR][1000 genomes]
rs16896014	1.00[AMR][1000 genomes]
rs16896147	1.00[AMR][1000 genomes]
rs16896211	1.00[AMR][1000 genomes]
rs57565988	1.00[AMR][1000 genomes]
rs57808767	1.00[AMR][1000 genomes]
rs58030477	1.00[AMR][1000 genomes]
rs58941677	1.00[AMR][1000 genomes]
rs60554881	1.00[AMR][1000 genomes]
rs60768551	1.00[AMR][1000 genomes]
rs73320629	1.00[AMR][1000 genomes]
rs73320654	1.00[AMR][1000 genomes]
rs73320659	1.00[AMR][1000 genomes]
rs73320675	1.00[AMR][1000 genomes]
rs73320694	1.00[AMR][1000 genomes]
rs73322724	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030713	chr8:122714959-122780805	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16895987	DHRS9	trans	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122768400-122788200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:122775200-122778000	Enhancers	Fetal Lung	lung
3	chr8:122776000-122777000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:122776400-122777000	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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