Variant report

Variant	rs58030477
Chromosome Location	chr8:122667011-122667012
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16895786	1.00[AMR][1000 genomes]
rs16895925	1.00[AMR][1000 genomes]
rs16895952	1.00[AMR][1000 genomes]
rs16895987	1.00[AMR][1000 genomes]
rs16896014	1.00[AMR][1000 genomes]
rs16896147	1.00[AMR][1000 genomes]
rs16896211	1.00[AMR][1000 genomes]
rs57565988	1.00[AMR][1000 genomes]
rs57808767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58941677	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60554881	1.00[AMR][1000 genomes]
rs60768551	1.00[AMR][1000 genomes]
rs73320629	1.00[AMR][1000 genomes]
rs73320654	1.00[AMR][1000 genomes]
rs73320659	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73320675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73320694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73322724	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033501	chr8:122436332-122758651	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831446	chr8:122535039-122711959	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv1848372	chr8:122653247-122716049	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv32856	chr8:122664738-122674360	Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122662400-122671000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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