Variant report

Variant	rs16895925
Chromosome Location	chr8:122751693-122751694
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16895786	1.00[AMR][1000 genomes]
rs16895949	0.93[AFR][1000 genomes]
rs16895952	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16895987	1.00[AMR][1000 genomes]
rs16896014	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16896017	0.93[AFR][1000 genomes]
rs16896147	1.00[AMR][1000 genomes]
rs16896211	1.00[AMR][1000 genomes]
rs57565988	1.00[AMR][1000 genomes]
rs57808767	1.00[AMR][1000 genomes]
rs58030477	1.00[AMR][1000 genomes]
rs58941677	1.00[AMR][1000 genomes]
rs60554881	1.00[AMR][1000 genomes]
rs60768551	1.00[AMR][1000 genomes]
rs73320629	1.00[AMR][1000 genomes]
rs73320654	1.00[AMR][1000 genomes]
rs73320659	1.00[AMR][1000 genomes]
rs73320675	1.00[AMR][1000 genomes]
rs73320694	1.00[AMR][1000 genomes]
rs73322724	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033501	chr8:122436332-122758651	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1030713	chr8:122714959-122780805	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122742600-122754200	Weak transcription	HSMM	muscle
2	chr8:122748600-122753600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr8:122748800-122753200	Weak transcription	Primary T cells from cord blood	blood
4	chr8:122750200-122753200	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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