Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16900381	1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs16900396	1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16900417	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3798976	0.92[EUR][1000 genomes]
rs3798981	1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3799005	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3799006	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3799026	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3799029	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3799031	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3799033	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3823063	0.92[EUR][1000 genomes]
rs3823071	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7453486	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9294818	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9342739	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9351744	1.00[EUR][1000 genomes]
rs9360373	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9363981	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9363982	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
2	chr6:69701000-69737600	Weak transcription	Brain Hippocampus Middle	brain
3	chr6:69702400-69737600	Weak transcription	Brain Angular Gyrus	brain
4	chr6:69720400-69758600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:69721600-69752200	Weak transcription	Fetal Lung	lung
6	chr6:69723400-69742600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:69729400-69759400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr6:69732600-69733800	Enhancers	NH-A	brain
9	chr6:69732800-69735800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:69733400-69736000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:69733600-69735600	Weak transcription	HUVEC	blood vessel
12	chr6:69733600-69736000	Weak transcription	NHDF-Ad	bronchial
13	chr6:69733600-69736000	Weak transcription	Osteobl	bone

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