Variant report

Variant	rs3799026
Chromosome Location	chr6:69791170-69791171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1083694	0.82[JPT][hapmap]
rs1336633	1.00[JPT][hapmap]
rs1482326	1.00[JPT][hapmap]
rs16900381	0.84[EUR][1000 genomes]
rs16900396	0.92[EUR][1000 genomes]
rs16900417	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16900425	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16900539	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16900544	0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1751710	0.82[JPT][hapmap]
rs1849304	0.82[JPT][hapmap]
rs2050918	0.82[JPT][hapmap]
rs2880652	0.82[JPT][hapmap]
rs314197	0.82[JPT][hapmap]
rs314206	0.82[JPT][hapmap]
rs3757050	1.00[ASN][1000 genomes]
rs3798976	0.92[EUR][1000 genomes]
rs3798981	0.92[EUR][1000 genomes]
rs3799005	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3799006	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3799029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3799031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3799033	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3799046	0.82[JPT][hapmap]
rs3799047	0.82[JPT][hapmap]
rs3799048	0.82[JPT][hapmap]
rs3799051	0.82[JPT][hapmap]
rs3799053	0.82[JPT][hapmap]
rs3799055	0.82[JPT][hapmap]
rs3799064	0.82[JPT][hapmap]
rs3799067	0.82[JPT][hapmap]
rs3799073	0.82[JPT][hapmap]
rs3799075	0.82[JPT][hapmap]
rs3823063	0.92[EUR][1000 genomes]
rs3823071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3823073	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57339450	0.86[ASN][1000 genomes]
rs6939422	0.82[JPT][hapmap]
rs701654	0.82[JPT][hapmap]
rs7453486	1.00[CEU][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7744929	0.82[JPT][hapmap]
rs779475	0.82[JPT][hapmap]
rs779480	0.82[JPT][hapmap]
rs779481	0.82[JPT][hapmap]
rs779482	0.82[JPT][hapmap]
rs779484	0.82[JPT][hapmap]
rs779486	0.82[JPT][hapmap]
rs779488	0.82[JPT][hapmap]
rs9294818	1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9294824	0.82[JPT][hapmap]
rs9342739	1.00[CEU][hapmap];0.89[CHD][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9351744	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360373	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9363981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9363982	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446095	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv603633	chr6:69748600-69794079	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69753600-69794800	Weak transcription	Fetal Lung	lung
2	chr6:69760400-69800200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69784000-69797800	Weak transcription	Brain Angular Gyrus	brain

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