Variant report

Variant	rs7453486
Chromosome Location	chr6:69781701-69781702
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1336633	0.85[JPT][hapmap]
rs1482326	0.85[JPT][hapmap]
rs16900354	1.00[TSI][hapmap]
rs16900381	1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs16900396	1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs16900417	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16900425	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16900539	0.85[JPT][hapmap]
rs16900544	0.85[JPT][hapmap]
rs3757050	0.92[ASN][1000 genomes]
rs3798976	0.92[EUR][1000 genomes]
rs3798981	0.92[EUR][1000 genomes]
rs3799005	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3799006	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs3799026	1.00[CEU][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3799029	1.00[CEU][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3799031	1.00[CEU][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3799033	1.00[CEU][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3823063	0.92[EUR][1000 genomes]
rs3823071	1.00[CEU][hapmap];0.85[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3823073	0.88[CHD][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs62406840	1.00[AFR][1000 genomes]
rs62406852	1.00[AFR][1000 genomes]
rs62406853	1.00[AFR][1000 genomes]
rs72911193	1.00[AFR][1000 genomes]
rs72911196	1.00[AFR][1000 genomes]
rs9294818	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9342739	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9351744	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9360373	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9363981	1.00[CEU][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9363982	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9446095	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv463148	chr6:69746054-69781786	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv603632	chr6:69746054-69781786	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv603633	chr6:69748600-69794079	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69753600-69794800	Weak transcription	Fetal Lung	lung
2	chr6:69760400-69800200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69780200-69782400	Enhancers	A549	lung

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