Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1321974	1.00[AFR][1000 genomes]
rs16900648	1.00[AFR][1000 genomes]
rs1810640	1.00[AFR][1000 genomes]
rs3757053	1.00[AFR][1000 genomes]
rs3757054	1.00[AFR][1000 genomes]
rs41476950	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61579800	1.00[AFR][1000 genomes]
rs62406826	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62406839	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406852	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406853	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406857	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62406859	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62408262	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62408264	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62408266	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62408267	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62408268	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6901301	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6901653	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6920904	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72911193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72913031	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72913035	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7453486	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69927800-69933200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:69928400-69933200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:69931000-69933200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:69931000-69933600	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:69931800-69933200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:69931800-69933200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:69933000-69933200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr6:69933000-69933400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr6:69933000-69934000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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