Variant report
| Variant | rs41476950 |
|---|---|
| Chromosome Location | chr6:69883838-69883839 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs3799005 | 1.00[AFR][1000 genomes] |
| rs3799006 | 1.00[AFR][1000 genomes] |
| rs62406826 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs62406839 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs62406840 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs62406852 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs62406853 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs62406857 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs62406859 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs62408262 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs62408264 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs62408266 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs62408267 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs62408268 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6901301 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6901653 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs6920904 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72911193 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72911196 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72913031 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72913035 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv886137 | chr6:69684850-70095690 | Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv526130 | chr6:69851816-69922327 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv1029637 | chr6:69855697-69916758 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv886138 | chr6:69865641-69924282 | Enhancers Weak transcription Flanking Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv432919 | chr6:69873179-70221322 | Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:69876800-69889800 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
| 2 | chr6:69877000-69891000 | Weak transcription | Ganglion Eminence derived primary cultured neurospheres | brain |
