Variant report

Variant	rs62406839
Chromosome Location	chr6:69922483-69922484
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs41476950	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62406826	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62406840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406852	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406853	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406857	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62406859	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62408262	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62408264	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62408266	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62408267	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62408268	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6901301	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6901653	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6920904	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72911193	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72911196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72913031	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72913035	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886138	chr6:69865641-69924282	Enhancers Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69913600-69924400	Weak transcription	Fetal Lung	lung
2	chr6:69922400-69922600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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