Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:69945273..69948750-chr6:69949553..69951679,3	K562	blood:
2	chr6:69946191..69948467-chr6:69949545..69951679,2	K562	blood:
3	chr6:69947964..69950395-chr6:70031598..70033125,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1321974	1.00[AFR][1000 genomes]
rs16900648	1.00[AFR][1000 genomes]
rs1810640	1.00[AFR][1000 genomes]
rs3757053	1.00[AFR][1000 genomes]
rs3757054	1.00[AFR][1000 genomes]
rs41476950	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61579800	1.00[AFR][1000 genomes]
rs62406826	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62406839	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406840	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406853	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62406857	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62406859	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62408262	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62408264	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62408266	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62408267	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62408268	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6901301	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6901653	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6920904	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72911193	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72911196	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72913031	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72913035	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7453486	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv432919	chr6:69873179-70221322	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69945600-69954400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:69946200-69960400	Weak transcription	Brain Anterior Caudate	brain
3	chr6:69948600-69970200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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